Jingjing Zhai
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Add links for each model in README
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README.md
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PlantCaduceus is a DNA language model pre-trained on 16 Angiosperm genomes. Utilizing the [Caduceus](https://caduceus-dna.github.io/) and [Mamba](https://arxiv.org/abs/2312.00752) architectures and a masked language modeling objective, PlantCaduceus is designed to learn evolutionary conservation and DNA sequence grammar from 16 species spanning a history of 160 million years. We have trained a series of PlantCaduceus models with varying parameter sizes:
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- **PlantCaduceus_l20**: 20 layers, 384 hidden size, 20M parameters
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- **PlantCaduceus_l24**: 24 layers, 512 hidden size, 40M parameters
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- **PlantCaduceus_l28**: 28 layers, 768 hidden size, 112M parameters
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- **PlantCaduceus_l32**: 32 layers, 1024 hidden size, 225M parameters
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## How to use
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```python
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PlantCaduceus is a DNA language model pre-trained on 16 Angiosperm genomes. Utilizing the [Caduceus](https://caduceus-dna.github.io/) and [Mamba](https://arxiv.org/abs/2312.00752) architectures and a masked language modeling objective, PlantCaduceus is designed to learn evolutionary conservation and DNA sequence grammar from 16 species spanning a history of 160 million years. We have trained a series of PlantCaduceus models with varying parameter sizes:
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- **[PlantCaduceus_l20](https://huggingface.co/kuleshov-group/PlantCaduceus_l20)**: 20 layers, 384 hidden size, 20M parameters
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- **[PlantCaduceus_l24](https://huggingface.co/kuleshov-group/PlantCaduceus_l24)**: 24 layers, 512 hidden size, 40M parameters
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- **[PlantCaduceus_l28](https://huggingface.co/kuleshov-group/PlantCaduceus_l28)**: 28 layers, 768 hidden size, 112M parameters
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- **[PlantCaduceus_l32](https://huggingface.co/kuleshov-group/PlantCaduceus_l32)**: 32 layers, 1024 hidden size, 225M parameters
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## How to use
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```python
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