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Runtime error
Runtime error
Paulhrd
commited on
Commit
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4411d6c
1
Parent(s):
d4de1ad
import pipeline
Browse files
app.py
CHANGED
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import gradio as gr
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demo = gr.Interface(
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fn=
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inputs="text",
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outputs="text",
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title="Biology Sequence Classifier",
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description="This application determines with a protein sequence given where the localization of this protein sequence comes from",
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examples=None,
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theme=None,
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allow_flagging="never",
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import gradio as gr
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from transformers import pipeline
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import torch
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# Chargement du pipeline de classification de texte avec le modèle spécifique
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pipe = pipeline("text-classification", model="Rocketknight1/esm2_t6_8M_UR50D-finetuned-localization")
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def classify_sequence(sequence):
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result = pipe(sequence)
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# Extraction de la localisation prédite à partir du résultat
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localization = result[0]['label']
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return localization
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demo = gr.Interface(
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fn=classify_sequence,
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inputs="text",
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outputs="text",
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title="Biology Sequence Classifier",
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description="This application determines with a protein sequence given where the localization of this protein sequence comes from. You can try those sequences from each localization:\n'Cell.membrane': 'MGLSDGEWQLVLNVWGKVEADIPGHGQEVLIRLFK',\n'Cytoplasm': 'MDDDIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG',\n'Endoplasmic.reticulum': 'MKAAVRKVLTVLLLAAAVAGCGNASAEANQNGKPR',\n'Extracellular': 'MGRDGIDTDVFSGPDGKTGQSINNYGGFGADND',\n'Golgi.apparatus': 'MKSVLLLALSLWILPGGQVTQGVDLSSFGNSDLK',\n'Lysosome/Vacuole': 'MKTLLLAILAAWATAEAQTAAPCSGSADAAPTP',\n'Mitochondrion': 'MALWMRLLPLLALLALWGPGPGLSGLALLLAVAP',\n'Nucleus': 'MGLRSGRGKTGGKARAKAKSRSSRAGLQFPVGR',\n'Peroxisome': 'MNLREVRDPLPAHLGRFLRVAAAYRLARFGSD',\n'Plastid': 'MSTIAHRAMVALGEPNAETMGRLEREGAEVRN'",
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examples=None,
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theme=None,
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allow_flagging="never",
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