ibm/otter_dude_distmult
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Otter DUDe Dataset Card
Otter DUDe includes 1,452,568 instances of drug-target interactions.
Dataset details
DUDe
DUDe comprises a collection of 22,886 active compounds and their corresponding affinities towards 102 targets. For our study, we utilized a preprocessed version of the DUDe, which includes 1,452,568 instances of drug-target interactions. To prevent any data leakage, we eliminated the negative interactions and the overlapping triples with the TDC DTI dataset. As a result, we were left with a total of 40,216 drug-target interaction pairs.
Original dataset:
- Citation: Samuel Sledzieski, Rohit Singh, Lenore Cowen, and Bonnie Berger. Adapting protein language models for rapid dti prediction. bioRxiv, pages 2022–11, 2022
Paper or resources for more information:
License:
MIT
Where to send questions or comments about the dataset:
Models trained on Otter UBC
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