Madhavan Venkatesh

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New activity in ctheodoris/Geneformer 2 months ago

RuntimeError: CUDA error: device-side assert triggered during Geneformer validation

1

#411 opened 2 months ago by fs00431

test pr for notebook rendering

#419 opened 2 months ago by madhavanvenkatesh

New activity in madhavanvenkatesh/staging 2 months ago

Create testbook.ipynb

#1 opened 2 months ago by mvenk

New activity in ctheodoris/Geneformer 2 months ago

Create multi-task_cell_classification.ipynb

#418 opened 2 months ago by madhavanvenkatesh

Upload Multi-Task_cell_classification.ipynb

#417 opened 2 months ago by madhavanvenkatesh

CUDA kernels incompatible with standard PyTorch device movement with 4bit/8bit, necessitating device-specific handling

#416 opened 2 months ago by madhavanvenkatesh

Add find_packages to automatically include mtl and subpackages in setup.py

#410 opened 2 months ago by madhavanvenkatesh

adding tensorboard to setup.py

#409 opened 2 months ago by madhavanvenkatesh

tensorboard add to reqs

#407 opened 2 months ago by madhavanvenkatesh

remove token dictionary and unpickling from init

#403 opened 2 months ago by madhavanvenkatesh

dictionaries from parent dir

#405 opened 2 months ago by madhavanvenkatesh

parent directory for dictionary

#404 opened 2 months ago by madhavanvenkatesh

New activity in ctheodoris/Geneformer 3 months ago

Refactored token dictionary loading and encapsulated dictionary

#398 opened 3 months ago by madhavanvenkatesh

inheritance issues

#396 opened 3 months ago by madhavanvenkatesh

Errors from the new version of the geneformer (classifier.py)

10

#394 opened 3 months ago by bsb0613

pointing dictionaries from the mtl module's init

#397 opened 3 months ago by madhavanvenkatesh

Refactor: Convert mask_token_id, pad_token_id, and all_special_ids to properties

#395 opened 3 months ago by madhavanvenkatesh

allow model_type valid options to take params model_type : {"Pretrained", "GeneClassifier", "CellClassifier", "MTLCellClassifier", "MTLCellClassifier-Quantized"}

#390 opened 3 months ago by madhavanvenkatesh

peft>=0.11.1

#387 opened 3 months ago by madhavanvenkatesh

add peft==0.11.1 to req

#386 opened 3 months ago by madhavanvenkatesh